• Home
  • Search
  • Browse 1
    Structure Score Browser Intramolecular RRI Browser Intermolecular RRI Browser
  • Analysis 1
    Structure Score Imputation RNA Structure Prediction RBP binding Prediction Sequence Alignment
  • Statistics
    Footprinting-based data Proximity ligation-based data
  • Download
  • Help
Welcome to RASP Database v2.0

RASP (RNA Alatas of Structure Probing) is a RNA structure probing database.

You can click the help button help1 in the upper right corner or the document button help1 on the right to get help.

This site uses cookies to give you a better experience. Click Agree button to confirm it.

RASP does not support IE browser!

Download structure score files

Download intramolecular RNA-RNA interaction files

Download intermolecular RNA-RNA interaction files

Click species to download:
Human
Mouse
Yeast
IAV

Download sequences and annotation files

Species Genome Annotation
Animals Human hg38.fa.gz hg38.gff3.gz
Mouse mm10.fa.gz mm10.gff3.gz
Zebrafish GRCZ11.fa.gz GRCZ11.gff3.gz
Green monkey Vero.fa.gz Vero.gff3.gz
Plants A. thaliana TAIR10.fa.gz TAIR10.gff3.gz
Rice rice.fa.gz rice.gff3.gz
Bacteria & fungi Yeast yeast.fa.gz yeast.gff3.gz
E. coli ecoli.fa.gz ecoli.gff3.gz
P. putida Pputida.fa.gz Pputida.gff3.gz
Synechococcus Synechococcus.fa.gz Synechococcus.gff3.gz
Y.pseudotuberculosis Y_pseudotuberculosis.fa.gz Y_pseudotuberculosis.gff3.gz
B.subtilis Bsubtilis.fa.gz Bsubtilis.gff3.gz
B.cereus Bcereus.fa.gz Bcereus.gff3.gz
S.enterica Senterica.fa.gz Senterica.gff3.gz
Virus HIV HIV.fa.gz HIV.gff3.gz
Dengue virus Dengue.fa.gz Dengue.gff3.gz
ZIKV ZIKV.fa.gz ZIKV.gff3.gz
HCV HCV.fa.gz HCV.gff3.gz
STMV STMV.fa.gz STMV.gff3.gz
CMV CMV.fa.gz CMV.gff3.gz
IAV IAV.fa.gz IAV.gff3.gz
SARS-CoV-2 SARS2.fa.gz SARS2.gff3.gz
Rotavirus rotavirus.fa.gz rotavirus.gff3.gz
CHIKV CHIKV.fa.gz CHIKV.gff3.gz

Contact us

  • Email
    mkt22@mails.tsinghua.edu.cn
    yuhan_fei@outlook.com
    qczhang@tsinghua.edu.cn

Useful links

  • Zhanglab in Tsinghua University PrismNet web server RASP database RISE database